The Table below summarizes the software available on Guillimin system. The specific software needed by various groups is available as modules. All versions corresponding to the installation of CentOS 5 on Guillimin.
CATEGORY  Software module name  DESCRIPTION  Link for more information 

APPLICATIONS  gromacs 4.5.4mvapich2intel  Molecular dynamics package for largescale systems  http://www.gromacs.org/About_Gromacs 
matlab2009b  Programming environment for algorithm development, data analysis, visualization, and numerical computation. (License available to McGill users only)  http://www.mathworks.com/products/matlab/  
octave/3.6.1  Open source Matlab alternative.  http://www.gnu.org/software/octave/  
OpenFOAM2.1IntelOpenMPI  A toolkit for creation of computational fluid dynamics (CFD) applications. It includes solver libraries and pre and postprocessing utilities.  http://www.openfoam.com/  
R2.14  A language and environment for statistical computing and graphics.  http://www.rproject.org/  
sas_9.2  A statistical analysis system  http://support.sas.com/cdlsearch?ct=80000  
abyss_1.3.3  ABySS is a de novo, parallel, pairedend sequence assembler that is designed for short reads.  http://www.bcgsc.ca/platform/bioinfo/software/abyss  
COMPILERS  gcc4.5.3  GNU Compiler Collection includes front ends for C, C++, ObjectiveC, Fortran, Java, Ada, and Go, as well as libraries for these languages (libstdc++, libgcj,...)  http://gcc.gnu.org/index.html 
intel  A suite of highperformance compilers from Intel. Includes C, C++, and Fortran compilers.  http://software.intel.com/enus/articles/intelcompilers/  
pgi 11.7  A suite of highperformance compilers from Portland Group. Includes C, C++, and Fortran compilers. Has GPU support.  http://www.pgroup.com/  
DEBUGGERS  DDT  Highefficient flexible parallel debugger, supporting practically all MPI and OpenMP packages.  http://www.allinea.com/products/ddt/ 
LIBRARIES  BLACS  Creates a linear algebra oriented message passing interface. These are the service libraries for SCALAPACK.  http://www.netlib.org/blacs/ 
boost1.47  Provides free peerreviewed portable C++ source libraries.  http://www.boost.org/  
CFITSIO3.28  A library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format  http://heasarc.gsfc.nasa.gov/fitsio/  
eigen3.03 eigen2.0.16 
A C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.  http://eigen.tuxfamily.org/index.php?title=Main_Page  
FFTW2.15 mvapich2intel FFTW3.3mvapich2intel 
Highlyefficient Fast Fourier transform (FFT) library in one and two dimensions. Includes MPI version.  http://www.fftw.org/  
FLTK  A crossplatform C++ GUI toolkit for UNIX^{®}/Linux^{®} (X11), Microsoft^{®} Windows^{®}, and MacOS^{®} X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL^{®} and its builtin GLUT emulation.  http://www.fltk.org/  
freeglut2.6  An alternative to the OpenGL Utility Toolkit (GLUT) library  http://freeglut.sourceforge.net/  
GotoBLAS+LAPACK  GotoBLAS is a highlyoptimized (tuned for particular CPU model) BLAS library. Includes lev. 1,2, and 3 BLAS. LAPACK Provides routines for solving systems of simultaneous linear equations, leastsquares solutions of linear systems of equations, eigenvalue problems, and singular value problems. 
http://www.netlib.org/lapack/ http://www.netlib.org/blas/ 

GSL 1.15  A numerical library for C and C++ programmers  http://www.gnu.org/software/gsl/  
MKL  Highly efficient mathematical library from Intel. Includes BLAS, LAPACK, FFT libs  http://software.intel.com/enus/articles/intelmkl/  
netcdf: 3.6.3gcc, 3.6.3intel, 4.1.3intel  A set of libraries and selfdescribing, machineindependent data formats that support the creation, access, and sharing of arrayoriented scientific data.  http://www.unidata.ucar.edu/software/netcdf/  
petsc3.1  A suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.  http://www.mcs.anl.gov/petsc/  
PGPLOT5.2gfotran and 5.2g77  Library for C and Fortran for making simple scientific graphs of publication quality.  http://www.astro.caltech.edu/~tjp/pgplot/  
qtx113.3.8  Crossplatform GUI library  http://qtproject.org/  
SCALAPACK compiled with:mvapichintel,mvapich2gcc,mvapich2intel, mvapich2pgi,openmpiintel, openmpipgi  Scalable LAPACK  the parallel version of LAPACK for distributed memory systems.  http://www.netlib.org/scalapack/ 